Software documentation

Some ini­tial soft­ware doc­u­men­ta­tion has now been added under Doc­u­men­ta­tion. The doc­u­men­ta­tion has been auto­mat­i­cally gen­er­ated with Doxy­gen so all con­tent can be found as com­ments in the code and the doc­u­men­ta­tion will be updated as the code is fur­ther documented.

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